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BMC Bioinformatics|January 14, 2014
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov modelsTravis J Wheeler, Jody Clements, Robert D FinnBioinformatics Advances|July 5, 2024
Sensitive and error-tolerant annotation of protein-coding DNA with BATHGenevieve R Krause, Walt Shands, Travis J WheelerMobile DNA|January 24, 2021
Transposable element subfamily annotation has a reproducibility problemKaitlin M Carey, Gilia Patterson, Travis J WheelerBiorxiv : the Preprint Server for Biology|January 23, 2024
Sensitive and error-tolerant annotation of protein-coding DNA with BATHGenevieve R Krause, Walt Shands, Travis J WheelerNAR Genomics and Bioinformatics|October 10, 2022
SODA: a TypeScript/JavaScript library for visualizing biological sequence annotationJack W Roddy, George T Lesica, Travis J WheelerBioinformatics (Oxford, England)|April 12, 2026
MDCompress: better, faster compression of molecular dynamics simulation trajectoriesMarek Kokot, Amitava Roy, Travis J Wheeler, et al.Biorxiv : the Preprint Server for Biology|February 14, 2024
nail: software for high-speed, high-sensitivity protein sequence annotationJack W Roddy, David H Rich, Travis J WheelerMolecular Biology and Evolution|March 16, 2006
Adaptive protein evolution and regulatory divergence in DrosophilaJeffrey M Good, Celine A Hayden, Travis J WheelerBioinformatics (Oxford, England)|October 20, 2005
Evaluating and improving cDNA sequence quality with cQCCeline A Hayden, Travis J Wheeler, Richard A JorgensenNAR Genomics and Bioinformatics|May 20, 2022
Accuracy of multiple sequence alignment methods in the reconstruction of transposable element familiesRobert Hubley, Travis J Wheeler, Arian F A SmitPageof 13