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BMC Bioinformatics|October 10, 2009
A stochastic context free grammar based framework for analysis of protein sequencesWitold Dyrka, Jean-Christophe Nebel
Algorithms for Molecular Biology : AMB|December 20, 2013
Probabilistic grammatical model for helix-helix contact site classificationWitold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
Bioinformatics (Oxford, England)|February 14, 2006
Generation of 3D templates of active sites of proteins with rigid prosthetic groupsJean-Christophe Nebel
BMC Bioinformatics|June 8, 2014
Scoring docking conformations using predicted protein interfacesReyhaneh Esmaielbeiki, Jean-Christophe Nebel
Protein and Peptide Letters|December 21, 2016
Reduced Fragment Diversity for Alpha and Alpha-Beta Protein Structure Prediction using RosettaJad Abbass, Jean-Christophe Nebel
Bioinformatics (Oxford, England)|July 15, 2025
Harnessing deep learning for proteome-scale detection of amyloid signaling motifsKrzysztof Pysz, Jakub Gałązka, Witold Dyrka
Journal of Computational Chemistry|April 3, 2008
Ion flux through membrane channels--an enhanced algorithm for the Poisson-Nernst-Planck modelWitold Dyrka, Andy T Augousti, Malgorzata Kotulska
Proteins|May 31, 2013
Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channelsWitold Dyrka, Maciej M Bartuzel, Malgorzata Kotulska
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