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VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
Molecular genetic approaches for the diagnosis of clonality in lymphoid neoplasms
C L Willman1, B B Griffith, M Whittaker
1Department of Cell Biology, University of New Mexico School of Medicine, Albuquerque.
Insights
Immunoglobulin (Ig) and T cell receptor (TCR) gene rearrangements are key molecular markers for detecting clonality in lymphoid lesions. These analyses aid in distinguishing benign from malignant proliferations and identifying specific B or T cell lineages.
Area of Science:
- Molecular Biology
- Oncology
- Immunology
Background:
- Rearrangements in immunoglobulin (Ig) and T cell receptor (TCR) genes are crucial for lymphoid cell development.
- Detecting clonality in lymphoid lesions is essential for accurate diagnosis and patient management.
Purpose of the Study:
- To highlight the utility of Ig and TCR gene rearrangements as molecular markers in pathology.
- To discuss the role of these markers in diagnosing lymphoid neoplasms and assessing residual disease.
Main Methods:
- Analysis of immunoglobulin (Ig) and T cell receptor (TCR) gene rearrangements.
- Integration of molecular data with morphology, immunohistochemistry, and flow cytometry.
- Application of novel molecular technologies like PCR and pulsed-field gel electrophoresis.
Main Results:
- Ig/TCR gene rearrangements effectively distinguish polyclonal from monoclonal lymphoid proliferations.
- These markers assist in confirming B or T cell lineage and differentiating lymphoid from non-lymphoid neoplasms.
- Identification of new proto-oncogenes at translocation breakpoints in lymphoid neoplasms.
Conclusions:
- Molecular probes for Ig/TCR genes and associated proto-oncogenes are valuable for diagnosing lymphoid neoplasms.
- Advanced molecular techniques enhance the detection of genetic rearrangements for monitoring minimal residual disease and early relapse detection.
Abstract:
Rearrangements of immunoglobulin (Ig) and T cell receptor (TCR) genes provide a highly sensitive molecular marker for the detection of clonality in lymphoid lesions and allow the pathologist to (1) distinguish polyclonal from monoclonal lymphoid proliferations, (2) provide corroborative evidence for lineage when used in conjunction with immunophenotypic techniques, (3) differentiate clonal lymphoid lesions from poorly differentiated nonlymphoid neoplasms, and (4) assess residual disease at the molecular level. The use of these probes in conjunction with morphology and immunohistochemistry or flow cytometry allows the pathologist to assign virtually all lymphoid neoplasms to the B or T cell lineage. The cloning of Ig and TCR genes also has led to the identification of new protooncogenes that reside at the breakpoints of chromosomal translocations frequently observed in lymphoid neoplasms. Molecular probes for these new genes involved in the pathogenesis of lymphoid neoplasms may be used as additional molecular markers for the determination of clonality, lineage, and even histologic subtype of lymphoid neoplasms. Finally, the development of new molecular technologies such as polymerase chain reaction and pulsed-field gel electrophoresis has provided new tools for the highly sensitive detection of genetic rearrangements in human tumors and will greatly enhance the ability of the pathologist to monitor minimal residual disease and detect early relapse.
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