Characterization of unusual alkenones and alkyl alkenoates by electron ionization gas chromatography/mass spectrometry
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Updated: Jul 29, 2026

Free Radicals in Chemical Biology: from Chemical Behavior to Biomarker Development
Published on: April 15, 2013
J-F Rontani1, F G Prahl, J K Volkman
1Laboratoire de Microbiologie de Géochimie et d'Ecologie Marines (LMGEM-UMR 6117), Centre d'Océanologie de Marseille, F-13288 Marseille, France. rontani@com.univ-mrs.fr
Abstract:
Unusual long-chain, diunsaturated alkenones and alkyl alkenoates exhibiting double bonds separated by three methylene units instead of the more usual five were characterized by electron ionization (EI) gas chromatography/mass spectrometry. In a first step, the positions of the double bonds of these compounds (isolated from Holocene Black Sea sediments) were confirmed after OsO4 treatment and silylation. Mass spectra of the resulting tetratrimethylsilyloxy derivatives allowed unambiguous determination of the positions of unsaturations. The EI mass spectra of the non-derivatized compounds were then compared with those of the alkenones and alkyl alkenoates having double bonds separated by five methylene units. Specific fragment ions resulting from gamma-H rearrangements were found to be prominent in EI mass spectra of these unusual 'Black Sea' diunsaturated alkenones and alkyl alkenoates. These fragment ions can be used to characterize these compounds in natural samples without the need for laborious derivatization treatments.
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