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A transcriptomics resource for wheat functional genomics.

Ian D Wilson1, Gary L A Barker, Richard W Beswick

  • 1University of Bristol, Department of Biological Sciences, Woodland Road, Bristol BS8 1UG, UK.

Plant Biotechnology Journal
|December 7, 2006
PubMed
Summary
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Researchers created valuable resources for studying wheat development and stress responses. These include a gene expression database, detailed images of grain development, and high-density microarrays for future research.

Area of Science:

  • Plant biology
  • Cereal science
  • Genomics

Background:

  • Investigating gene function in hexaploid wheat is crucial for understanding grain development, germination, and abiotic stress responses.
  • The cereal community requires comprehensive resources for studying these developmental processes.

Purpose of the Study:

  • To generate and curate resources for investigating alterations in the hexaploid wheat transcriptome during key developmental stages.
  • To create a publicly accessible database of annotated sequencing results and high-quality images of wheat development.

Main Methods:

  • Single-pass sequencing of 700-1300 random cDNA clones from 35 distinct developmental stage libraries.
  • Detailed photography and annotation of tissue stages to create a wheat development website.

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  • Production of high-density microarrays using a public wheat unigene set.

    • Main Results:

    • A publicly accessible online database (http://www.cerealsdb.uk.net) containing annotated sequencing results.
    • A website (http://www.wheatbp.net/) featuring detailed, annotated micrograph images of wheat grain development.
    • Validated high-density microarrays derived from 35 cDNA libraries.

    Conclusions:

    • The generated resources provide a foundation for in-depth transcriptome analysis of wheat development.
    • These resources facilitate research into gene function and abiotic stress responses in cereals.
    • The publicly available data and tools will advance the understanding of wheat biology.