Related Experiment Video
Updated: May 28, 2026

11:29
Modified Terminal Restriction Fragment Analysis for Quantifying Telomere Length Using In-gel Hybridization
Published on: July 10, 2017
The structural studies of human telomeric DNA using AFM
1Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.
Nucleic Acids Symposium Series (2004)
|November 22, 2007
Summary
Long human telomeric DNA forms higher-order structures. This finding offers insights into telomere biology and the development of G-quadruplex-binding drugs for cancer therapy.
Area of Science:
- Biochemistry
- Molecular Biology
- Genetics
Background:
- Human telomeres are repetitive DNA sequences at the ends of chromosomes.
- Telomeric DNA can form G-quadruplex structures, which are implicated in telomere maintenance and cancer.
- Previous studies identified unique mixed parallel/antiparallel G-quadruplex topologies in K(+) solution.
Purpose of the Study:
- To investigate the structural characteristics of long, single-stranded human telomeric DNA.
- To determine if individual G-quadruplexes can oligomerize into higher-order structures.
- To explore the implications of these structures for telomere biology and drug development.
Main Methods:
- Synthesis of 22-nucleotide (nt) human telomeric DNA sequences with TTA linkers.
- Atomic Force Microscopy (AFM) imaging to visualize DNA structures.
Main Results:
- Long single-stranded human telomeric DNA forms a higher-order packing DNA structure.
- The oligomerization of individual G-quadruplexes was observed.
Conclusions:
- The formation of higher-order DNA structures by long human telomeric DNA provides crucial information for understanding telomere structure.
- These findings may aid in the development of novel telomere G-quadruplex-binding molecules as potential telomerase inhibitors for cancer treatment.
Related Concept Videos
Telomeres and Telomerase
In eukaryotic DNA replication, a single-stranded DNA fragment remains at the end of a chromosome after the removal of the final primer. This section of DNA cannot be replicated in the same manner as the rest of the strand because there is no 3’ end to which the newly synthesized DNA can attach. This non-replicated fragment results in gradual loss of the chromosomal DNA during each cell duplication. Additionally, it can induce a DNA damage response by enzymes that recognize single-stranded DNA.
Studying the Cytoskeleton
The cytoskeletal architecture can be studied using different microscopic and biochemical techniques. Electron microscopy was instrumental in discovering the cytoskeletal architecture around the 1960s, which allowed obtaining structural information at a high-resolution level. However, the sample preparation procedure often limits this ability in biological samples. Several protocols have been developed over the years to optimize sample preparation. In one of the protocols known as rotary...
Atomic Force Microscopy
Atomic force microscopy (AFM) is a type of scanning probe microscopy that can analyze topographic details of various specimens like ceramics, glass, polymers, and biological samples. AFM offers over 1000 times more resolution than the optical imaging system. Images generated from AFM are three-dimensional surface profiles, offering an advantage over the flat, two-dimensional images from other imaging techniques.
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...

