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Enhancing lipase activity in Aspergillus niger through CRISPR/Cas9-mediated protease gene knockout and fermentation
Hongmei Nie1, Zebin Wang1, Zhenkai Lin1
1Key Laboratory of Bioorganic Synthesis of Zhejiang Province, College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China.
Biotechnology Letters
|September 25, 2025
Summary
Engineered Aspergillus niger produced significantly more lipase after protease gene knockout and optimized fermentation. This strain achieved 92% higher lipase activity, demonstrating potential for industrial enzyme production.
Area of Science:
- Biotechnology
- Enzyme Engineering
- Microbial Fermentation
Background:
- The development of high-activity enzymes is crucial for industrial applications.
- Aspergillus niger is a well-established host for enzyme production.
- Candida antarctica B lipase is a valuable industrial enzyme.
Purpose of the Study:
- To enhance the production of Candida antarctica B lipase in Aspergillus niger.
- To improve enzyme activity through genetic modification and fermentation optimization.
- To establish robust fermentation conditions for scale-up.
Main Methods:
- CRISPR/Cas9 gene editing was used to create protease-deficient Aspergillus niger strains.
- Protease gene knockouts (pepA, pepB, pepF) were investigated for their effect on lipase activity.
- Statistical experimental designs (Plackett-Burman, Box-Behnken) were employed for fermentation parameter optimization.
- Shake-flask and bioreactor cultivations were performed to validate optimized conditions.
Main Results:
- A triple-knockout strain (ΔpepA, ΔpepB, ΔpepF) showed a 56% increase in hydrolytic lipase activity.
- Optimized fermentation parameters included specific concentrations of maltose and corn steep, and a defined shaking speed.
- Shake-flask validation achieved 46.66 U/mL lipase activity (92.01% increase).
- Scale-up in a 5 L bioreactor yielded 79.31 U/mL lipase activity.
Conclusions:
- Genetic modification by knocking out specific protease genes significantly enhances lipase activity in Aspergillus niger.
- Optimization of fermentation conditions is critical for maximizing enzyme yield.
- The engineered strain and optimized process show strong potential for industrial lipase production.

