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Large-Scale Multi-Omics Genome-Wide Association Studies Mo-GWAS: Guidelines for Sample Preparation and Normalization
Published on: July 27, 2021
Standardized Omics at a Global Scale: A Perspective on Barriers, Opportunities, and Lessons Learned
Melanie T Odenkirk1, Eunice Afia Amponsah2, Amos Anim2
1Department of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, Colorado 80524, United States.
Global participation in omics science is hindered by unequal access to resources. The Periodic Table of Food Initiative (PTFI) highlights significant logistical barriers, especially for low- and middle-income countries (LMICs), impacting global data standardization.
Area of Science:
- Omics science
- Analytical chemistry
- Data science
Background:
- Omics science is rapidly advancing due to innovations in analytical chemistry and data science.
- Equitable global participation in omics is limited by uneven access to infrastructure, training, and other barriers.
- Standardization efforts are crucial for generating large, comparable datasets.
Purpose of the Study:
- To share lessons learned from the initial dissemination of standardized food analysis workflows by The Periodic Table of Food Initiative (PTFI).
- To highlight obstacles encountered by international partner laboratories, particularly in low- and middle-income countries (LMICs).
- To identify key drivers for laboratory adoption of standardized omics methods.
Main Methods:
- Distribution of standardized omics workflows to 19 international partner laboratories.
- Qualitative reporting of logistical challenges and barriers encountered.
- Comparative analysis of reagent shipment times between high-income countries (HICs) and LMICs.
Main Results:
- Widespread logistical challenges in instrument procurement and operation were documented, especially in LMICs.
- Reagent shipments averaged 4.25 days in HICs versus 65.6 days in LMICs, a 1444% increase.
- Key drivers influencing the adoption of standardized omics methods were identified, impacting global initiative viability.
Conclusions:
- Significant disparities in scientific infrastructure exist globally, posing substantial barriers to omics standardization.
- Democratizing omics and ensuring the sustainability of global initiatives requires addressing these challenges.
- Collective commitment from the international scientific community is essential for developing globally accessible, end-to-end omics workflows.
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