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Updated: May 20, 2025

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Multicolor Fluorescence Detection for Droplet Microfluidics Using Optical Fibers
Published on: May 5, 2016
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Combining time domain modulation optofluidics and high dynamic range imaging for multiplexed, high throughput digital
Yasemin Atiyas1, Michael J Siedlik2, Stephanie J Yang1
1Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Microsystems & Nanoengineering
|May 16, 2025
Summary
Digital enzyme-linked immunoassays (dELISA) enable ultrasensitive quantification. A new optofluidic platform achieves high-throughput multiplexing for digital assays by parallelizing droplet generation and detection.
Area of Science:
- Biotechnology
- Analytical Chemistry
- Microfluidics
Background:
- Digital enzyme-linked immunoassays (dELISA) offer ultrasensitive analyte quantification in complex samples.
- Current dELISA methods face challenges in achieving high-throughput multiplexing for billions of compartments.
- Ultrasensitive detection is crucial for clinical diagnostics and research.
Purpose of the Study:
- To develop a high-throughput optofluidic platform for multiplexed digital assays.
- To overcome limitations in generating and detecting multiplexed dELISA compartments.
- To enable simultaneous quantification of multiple analytes with high sensitivity and throughput.
Main Methods:
- Developed a novel optofluidic platform for quantitative fluorescence measurements.
- Utilized microbeads encoded with distinct ratios of two fluorescent dyes for multiplexing.
- Implemented parallelized droplet generation and detection with time-domain encoding.
- Employed high dynamic range (HDR) photography principles for enhanced imaging.
Main Results:
- Achieved high-throughput droplet generation at 6 × 10^6 droplets/min.
- Demonstrated accurate classification of five populations of dual-encoded microbeads (>99% accuracy).
- Successfully detected bead-bound streptavidin-horseradish peroxidase in a third fluorescence channel.
Conclusions:
- Established a technological foundation for high-multiplexing, high-throughput droplet digital assays.
- The platform enables advanced multiplexed ultrasensitive quantification.
- This work paves the way for broader clinical applications of dELISA.

